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If upgrading to the next release, i.e. 4.0.1 to 4.0.2, then

Extract the downloaded zip and to retrieve the the migration.sql. As sys or system, execute the the migration.sql file  file to upgrade FlexDeploy schemas. 

Warning

If upgrading more than one release (for instance 3.7.1 to 4.0.1 or 4.0 to 4.0.2, more steps are needed. Please contact Flexagon for help to be certain that the database migration is run correctly.