You should activate newer versions of the Plugins by clicking Activate button.

Make sure there are no plugin jar files left in folder where you copied new plugin jar files as part of Copy Plugins for Auto Upload. It may take few minutes for all plugins to load. If there are still plugin jar files after 10 minutes, please look at logs and contact Flexagon support or upload plugins using Upload button on plugins page.
Go to Administration - Plugins.
You will see newly uploaded plugins on top. Refer to Installed On date.
Activate each new plugin version one at a time. In future versions, plugins will automatically be activated.

Refer to the Installing/Upgrading Plugins to install/activate plugins.

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