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FlexDeploy 5.1 migration includes updates to Unique Constraint for FF.DB_PROPERTIES_DATA. If you have duplicates then it needs to be fixed up prior to starting migration. Run following SQL to check if there are any duplicates. If there are duplicates, work with Flexagon support team to resolve prior to migration.

SELECT * FROM (SELECT DB_PROPERTIES_ID, SEQUENCE_NUMBER, COUNT(1) NUMROWS
FROM FF.DB_PROPERTIES_DATA 
GROUP BY DB_PROPERTIES_ID, SEQUENCE_NUMBER) 
WHERE NUMROWS>1;